Index

A

AdversarialLoss (class in serotiny.nn.losses.adversarial_loss) after_save_checkpoint() (serotiny.loggers.mlflow.MLFlowLogger method)

append_class_weights() (in module serotiny.dataframe.transforms.misc) append_labels_to_integers() (in module serotiny.dataframe.transforms.misc) append_one_hot() (in module serotiny.dataframe.transforms.misc)

B

BaseModel (class in serotiny.models.base_model)

BasicModel (class in serotiny.models.basic_model)

C

CBLogLoss (class in serotiny.nn.losses.continuous_bernoulli)

configure_optimizers() (serotiny.models.base_model.BaseModel method) CosineLoss (class in serotiny.nn.losses.cosine_loss)

D

DataframeDatamodule (class in serotiny.datamodules.dataframe.dataframe_datamodule)

F

filter_columns() (in module serotiny.dataframe.readers) (in module serotiny.dataframe.transforms.filter) filter_rows() (in module serotiny.dataframe.transforms.filter) forward() (serotiny.models.base_model.BaseModel method) (serotiny.models.basic_model.BasicModel method) (serotiny.nn.losses.adversarial_loss.AdversarialLoss method) (serotiny.nn.losses.continuous_bernoulli.CBLogLoss method) (serotiny.nn.losses.cosine_loss.CosineLoss method) (serotiny.nn.losses.gaussian_nllloss.GaussianNLLLoss method) (serotiny.nn.losses.weibull.WeibullLogLoss method)

G

GaussianNLLLoss (class in serotiny.nn.losses.gaussian_nllloss) get_canonical_split_name() (in module serotiny.datamodules.dataframe.utils) get_config() (in module serotiny.models.utils.mlflow)

get_dataloader() (serotiny.datamodules.dataframe.dataframe_datamodule.DataframeDatamodule method) get_dataset() (in module serotiny.datamodules.dataframe.utils) (serotiny.datamodules.dataframe.dataframe_datamodule.DataframeDatamodule method) GroupCols (class in serotiny.dataframe.transforms.group_cols)

L

load_model_from_checkpoint() (in module serotiny.models.utils.mlflow)

log_hyperparams() (serotiny.loggers.mlflow.MLFlowLogger method)

M

make_dataloader() (serotiny.datamodules.dataframe.dataframe_datamodule.DataframeDatamodule method) make_multiple_dataframe_splits() (in module serotiny.datamodules.dataframe.utils) make_random_df() (in module serotiny.dataframe.transforms.misc) make_single_dataframe_splits() (in module serotiny.datamodules.dataframe.utils) MLFlowLogger (class in serotiny.loggers.mlflow) module serotiny serotiny.dataframe serotiny.dataframe.readers serotiny.dataframe.transforms serotiny.dataframe.transforms.filter serotiny.dataframe.transforms.group_cols serotiny.dataframe.transforms.misc serotiny.dataframe.transforms.split serotiny.datamodules serotiny.datamodules.dataframe serotiny.datamodules.dataframe.dataframe_datamodule serotiny.datamodules.dataframe.utils serotiny.loggers serotiny.loggers.mlflow serotiny.models serotiny.models.base_model serotiny.models.basic_model serotiny.models.utils serotiny.models.utils.mlflow serotiny.nn serotiny.nn.losses serotiny.nn.losses.adversarial_loss serotiny.nn.losses.continuous_bernoulli serotiny.nn.losses.cosine_loss serotiny.nn.losses.gaussian_nllloss serotiny.nn.losses.weibull

P

parse_batch() (serotiny.models.base_model.BaseModel method) (serotiny.models.basic_model.BasicModel method)

parse_transforms() (in module serotiny.datamodules.dataframe.utils) predict_dataloader() (serotiny.datamodules.dataframe.dataframe_datamodule.DataframeDatamodule method) predict_step() (serotiny.models.base_model.BaseModel method)

R

read_csv() (in module serotiny.dataframe.readers) read_dataframe() (in module serotiny.dataframe.readers) read_h5ad() (in module serotiny.dataframe.readers) read_parquet() (in module serotiny.dataframe.readers)

reduction (serotiny.nn.losses.adversarial_loss.AdversarialLoss attribute) (serotiny.nn.losses.continuous_bernoulli.CBLogLoss attribute) (serotiny.nn.losses.cosine_loss.CosineLoss attribute) (serotiny.nn.losses.gaussian_nllloss.GaussianNLLLoss attribute) (serotiny.nn.losses.weibull.WeibullLogLoss attribute)

S

sample_n_each() (in module serotiny.dataframe.transforms.split) serotiny module serotiny.dataframe module serotiny.dataframe.readers module serotiny.dataframe.transforms module serotiny.dataframe.transforms.filter module serotiny.dataframe.transforms.group_cols module serotiny.dataframe.transforms.misc module serotiny.dataframe.transforms.split module serotiny.datamodules module serotiny.datamodules.dataframe module serotiny.datamodules.dataframe.dataframe_datamodule module serotiny.datamodules.dataframe.utils module serotiny.loggers module

serotiny.loggers.mlflow module serotiny.models module serotiny.models.base_model module serotiny.models.basic_model module serotiny.models.utils module serotiny.models.utils.mlflow module serotiny.nn module serotiny.nn.losses module serotiny.nn.losses.adversarial_loss module serotiny.nn.losses.continuous_bernoulli module serotiny.nn.losses.cosine_loss module serotiny.nn.losses.gaussian_nllloss module serotiny.nn.losses.weibull module split_dataframe() (in module serotiny.dataframe.transforms.split)

T

test_dataloader() (serotiny.datamodules.dataframe.dataframe_datamodule.DataframeDatamodule method) test_epoch_end() (serotiny.models.base_model.BaseModel method) test_step() (serotiny.models.base_model.BaseModel method)

train_dataloader() (serotiny.datamodules.dataframe.dataframe_datamodule.DataframeDatamodule method) train_epoch_end() (serotiny.models.base_model.BaseModel method) training_step() (serotiny.models.base_model.BaseModel method)

V

val_dataloader() (serotiny.datamodules.dataframe.dataframe_datamodule.DataframeDatamodule method)

validation_epoch_end() (serotiny.models.base_model.BaseModel method) validation_step() (serotiny.models.base_model.BaseModel method)

W

weibull_log_probs() (in module serotiny.nn.losses.weibull)

WeibullLogLoss (class in serotiny.nn.losses.weibull)