aicssegmentation package

Subpackages

• aicssegmentation.bin package
  • Submodules
  • aicssegmentation.bin.batch_processing module
  • Module contents
• aicssegmentation.cli package
  • Submodules
  • aicssegmentation.cli.to_analysis module
  • Module contents
• aicssegmentation.core package
  • Submodules
  • aicssegmentation.core.MO_threshold module
  • aicssegmentation.core.hessian module
  • aicssegmentation.core.output_utils module
  • aicssegmentation.core.pre_processing_utils module
  • aicssegmentation.core.seg_dot module
  • aicssegmentation.core.utils module
  • aicssegmentation.core.vessel module
  • aicssegmentation.core.visual module
  • Module contents
• aicssegmentation.structure_wrapper package
  • Submodules
  • aicssegmentation.structure_wrapper.seg_PCNA_earlyS_midS module
  • aicssegmentation.structure_wrapper.seg_PCNA_lateS module
  • aicssegmentation.structure_wrapper.seg_PCNA_lateS_hole_fill module
  • aicssegmentation.structure_wrapper.seg_actb module
  • aicssegmentation.structure_wrapper.seg_actn1 module
  • aicssegmentation.structure_wrapper.seg_atp2a2 module
  • aicssegmentation.structure_wrapper.seg_cardio_actn2 module
  • aicssegmentation.structure_wrapper.seg_cardio_atp2a2 module
  • aicssegmentation.structure_wrapper.seg_cardio_fbl module
  • aicssegmentation.structure_wrapper.seg_cardio_fbl_100x module
  • aicssegmentation.structure_wrapper.seg_cardio_myl7 module
  • aicssegmentation.structure_wrapper.seg_cardio_npm1 module
  • aicssegmentation.structure_wrapper.seg_cardio_npm1_100x module
  • aicssegmentation.structure_wrapper.seg_cardio_tnni1 module
  • aicssegmentation.structure_wrapper.seg_cardio_ttn module
  • aicssegmentation.structure_wrapper.seg_cetn2 module
  • aicssegmentation.structure_wrapper.seg_ctnnb1 module
  • aicssegmentation.structure_wrapper.seg_drug_npm1 module
  • aicssegmentation.structure_wrapper.seg_dsp module
  • aicssegmentation.structure_wrapper.seg_fbl module
  • aicssegmentation.structure_wrapper.seg_fbl_labelfree_4dn module
  • aicssegmentation.structure_wrapper.seg_gja1 module
  • aicssegmentation.structure_wrapper.seg_h2b_interphase module
  • aicssegmentation.structure_wrapper.seg_lamp1 module
  • aicssegmentation.structure_wrapper.seg_lmnb1_interphase module
  • aicssegmentation.structure_wrapper.seg_lmnb1_mitotic module
  • aicssegmentation.structure_wrapper.seg_myh10 module
  • aicssegmentation.structure_wrapper.seg_npm1 module
  • aicssegmentation.structure_wrapper.seg_npm1_SR module
  • aicssegmentation.structure_wrapper.seg_npm_labelfree_4dn module
  • aicssegmentation.structure_wrapper.seg_nup153 module
  • aicssegmentation.structure_wrapper.seg_polr2a module
  • aicssegmentation.structure_wrapper.seg_polr2a_blob module
  • aicssegmentation.structure_wrapper.seg_pxn module
  • aicssegmentation.structure_wrapper.seg_rab5a module
  • aicssegmentation.structure_wrapper.seg_sec61b module
  • aicssegmentation.structure_wrapper.seg_sec61b_dual module
  • aicssegmentation.structure_wrapper.seg_slc25a17 module
  • aicssegmentation.structure_wrapper.seg_smc1a module
  • aicssegmentation.structure_wrapper.seg_son module
  • aicssegmentation.structure_wrapper.seg_st6gal1 module
  • aicssegmentation.structure_wrapper.seg_template module
  • aicssegmentation.structure_wrapper.seg_terf2 module
  • aicssegmentation.structure_wrapper.seg_tjp1 module
  • aicssegmentation.structure_wrapper.seg_tomm20 module
  • aicssegmentation.structure_wrapper.seg_tuba1b module
  • aicssegmentation.structure_wrapper.seg_ubtf module
  • aicssegmentation.structure_wrapper.structure_segmenter module
  • Module contents
• aicssegmentation.structure_wrapper_config package
  • Module contents
• aicssegmentation.util package
  • Submodules
  • aicssegmentation.util.directories module
  • aicssegmentation.util.filesystem module
  • aicssegmentation.util.lazy module
  • Module contents
• aicssegmentation.workflow package
  • Submodules
  • aicssegmentation.workflow.batch_workflow module
  • aicssegmentation.workflow.segmenter_function module
  • aicssegmentation.workflow.workflow module
  • aicssegmentation.workflow.workflow_config module
  • aicssegmentation.workflow.workflow_definition module
  • aicssegmentation.workflow.workflow_engine module
  • aicssegmentation.workflow.workflow_step module
  • Module contents

Submodules

aicssegmentation.exceptions module

exception aicssegmentation.exceptions.ArgumentNullError(parameter_name: str)

Bases: Exception

Thrown to indicate that a parameter is None when a value is expected

Module contents

Top-level package for aicssegmentation.

aicssegmentation.get_module_version()