Index

A

aicscytoparam module aicscytoparam.alignment module aicscytoparam.alignment.generic_2d_shape module aicscytoparam.alignment.shape_library_2d module

aicscytoparam.bin module aicscytoparam.cytoparam module aicscytoparam.utils module

C

cellular_mapping() (in module aicscytoparam.cytoparam)

D

display() (aicscytoparam.alignment.shape_library_2d.ShapeLibrary2D method)

E

ElongatedHexagonalShape (class in aicscytoparam.alignment.generic_2d_shape)

F

find_angle_that_minimizes_countour_distance() (aicscytoparam.alignment.generic_2d_shape.Generic2DShape method)

find_best_match() (aicscytoparam.alignment.shape_library_2d.ShapeLibrary2D method)

G

Generic2DShape (class in aicscytoparam.alignment.generic_2d_shape) get_contour_from_3d_image() (aicscytoparam.alignment.generic_2d_shape.Generic2DShape static method) get_default_parameters_as_dict() (aicscytoparam.alignment.generic_2d_shape.ElongatedHexagonalShape static method) get_intensity_representation() (in module aicscytoparam.cytoparam)

get_interpolators() (in module aicscytoparam.cytoparam) get_mapping_coordinates() (in module aicscytoparam.cytoparam) get_module_version() (in module aicscytoparam) get_voxelized_image_of_mean_shape() (in module aicscytoparam.utils)

L

load_image_and_align_based_on_shape_library() (in module aicscytoparam.utils)

M

module aicscytoparam aicscytoparam.alignment aicscytoparam.alignment.generic_2d_shape aicscytoparam.alignment.shape_library_2d aicscytoparam.bin aicscytoparam.cytoparam aicscytoparam.utils

morph_representation_on_shape() (in module aicscytoparam.cytoparam)

P

parameterization_from_shcoeffs() (in module aicscytoparam.cytoparam)

parameterize_image_coordinates() (in module aicscytoparam.cytoparam)

R

rotate_contour() (aicscytoparam.alignment.generic_2d_shape.Generic2DShape static method)

S

set_base_shape() (aicscytoparam.alignment.shape_library_2d.ShapeLibrary2D method) set_parameters_range() (aicscytoparam.alignment.shape_library_2d.ShapeLibrary2D method)

ShapeLibrary2D (class in aicscytoparam.alignment.shape_library_2d) show() (aicscytoparam.alignment.generic_2d_shape.Generic2DShape method)